178 Fractals and Multifractals in Ecology and Aquatic Science
5.5.5.2.2 Experimental Procedures and Data Analysis
5.5.5.2.2.1 Centimeter-Scale (1.2 cm) Bacterioplankton Distribution
Sampling sites. The distribution of bacterial marine populations has been investigated from two
coastal sites, Port Noarlunga and Port River, in the metropolitan area of Adelaide, South Australia.
These sites have been chosen, rst, because their bacterial concentrations have been shown to dif-
fer by one order of magnitude and exhibit different degrees of variability in their total abundance
(Seymour et al. 2000, 2004) and, second, because they are characterized by two different hydrody-
namic and hydrological regimes. Port Noarlunga is an oligotrophic environment, exposed to turbu-
lence induced by waves breaking over a reef, while Port River is located in a eutrophic, sheltered
estuary inuenced by high levels of urban and industrial waste and intermittent ows of freshwa-
ter. Samples were taken from subsurface waters from the end of a coastal pier at Port Noarlunga
(35°09′S, 138°28′E) on March 21, 2002, and from a oating pontoon platform at Port River (34°49′S,
138°30′E) on May 9, 2002.
Microscale sampling. The two-dimensional distribution of bacterial distributions has been
investigated using a sampling device conceptually similar to the millimeter-scale resolution system
extensively described elsewhere (Seymour et al. 2000). The system consists of a 10×10 array of 1 ml
syringes, each separated by a distance of 1.2 cm and set to sample volumes of 100 µl. A messenger
weight would release the sampling mechanism and 100 subsamples would simultaneously be taken
across an area of 116 cm
2
(Seymour et al. 2004). Subsamples were subsequently transferred to 1
ml cryovials and immediately incubated with 2.5% paraformaldehyde for 20 minutes, before being
quick-frozen in liquid nitrogen and subsequently stored at –80°C.
Enumeration of bacterioplankton. Prior to ow cytometric analysis, frozen samples were quick-
thawed and transferred to 5 ml cytometry tubes. Samples were then stained with SYBR-I Green
solution (1:10000 dilution; Molecular Probes), and incubated in the dark for 15 minutes (Marie et al.
1997, 1999). Fluorescent beads of 1 µm diameter (Molecular Probes) were added to samples in a
nal concentration of ca. 10
5
beads ml
-1
(Gasol and del Giorgio 2000), and all measured cytometry
parameters were normalized to bead concentration and uorescence. After each cytometry session,
working bead solutions were enumerated using epiuorescent microscopy to ensure consistency
of the bead concentration (Gasol and del Giorgio 2000). Samples were analyzed using a Becton
Dickinson FACScan ow cytometer, with phosphate buffered saline (PBS) solution employed as a
sheath uid. For each sample, forward-angle light scatter (FALS), right-angle light scatter (RALS),
green (SYBR-I) uorescence, red uorescence, and orange uorescence were acquired. Acquisition
was run until at least 50 to 100 µl of the sample was analyzed at an approximate rate of 40 µl mn
−1
.
To avoid coincidence of particles, it was ensured that the rate of analysis was kept below 1000
events sec
−1
by diluting samples with 0.2 µm ltered seawater collected from the study site at time
of sampling when necessary (Gasol and del Giorgio 2000). Data were analyzed and bacterial popu-
lations were identied and enumerated using WinMDI (Scripps Research Institute) and CYTOWIN
(Vaulot 1989) ow cytometry analysis software.
5.5.5.2.2.2 Centimeter-Scale (1.2 cm) Phytoplankton Distribution
Sampling sites. Sampling was conducted on 9 December 2003, from a oating pontoon platform, in
the above described Port River estuary, Adelaide, South Australia (34°49′S, 138°30′E).
Microscale sampling. Two-dimensional samples were collected using the above-mentioned spring-
loaded 10×10 syringe array sampler, set up to simultaneously collect 100 samples of 200 µl each.
During sample collection, the array sampler was oriented vertically, 10 cm below the water surface
with the syringe inlets facing upstream. Sampling consisted of four sets of 100 samples, collected in
succession, at a time interval of 10 minutes, and referred to as P1, P2, P3, and P4 hereafter. At the
completion of sampling, syringe contents were subsampled (150 µl), transferred to cryovials with 2%
nal concentration paraformaldehyde, frozen in liquid nitrogen, and subsequently stored at −80°C.
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