532
9. Advanced Materials for the Future
(GVGIP)n. Phosphorylation removes more
than two-thirds of the proton-proton contacts
that report the hydrophobic associations within
the p-barrel.
Accordingly, both the temperature profile
data for following aggregation by hydrophobic
association and the 2D-NMR data indicate that
phosphorylation disrupts hydrophobic associa-
tion within the globular sensing element. Phos-
phorylation at one end of the p-barrel, as shown
in Figure 9.53A, reaches through the P-barrel
and, at least in part, disassembles the hydropho-
bically assembled structure. Thus, phosphoryla-
tion disrupts hydrophobic association, as a clear
demonstration of
AGap,
the apolar-polar repul-
sive free energy of hydration. The result in the
single-chain force-extension curve would be a
change in the profile of the single sawtooth.
Construction of a gene and expression of the
protein-based polymer for stable attachment to
cantilever tip and substrate, which means intro-
duction of proper functional groups at each end
of the designed polymer, will allow for a rigor-
ous testing of this nanosensor with potential to
detect a single molecular interaction.
9.4.8.2.4 Value of Sensitive and Selective
Assays for Kinases and Phosphatases
As is apparent in Chapter 8, phosphates are
the most polar molecular species available in
biology for controlling hydrophobic association/
dissociation, that is, for controlling processes
that occur by inverse temperature transition. It
follows, therefore, that kinases for phosphoryla-
tion and phosphatases for dephosphorylation
would be fundamental to key cellular trans-
ductional and transformational processes. ^^^'^^^
Often in cancerous and other diseased states,
the activities of these enzymes are abnormal.
Importantly for our interests, their sites of inter-
action can be very selective. Changes in protein
kinase C activities have been reported to be
abnormal in colon, breast, and skin cancers.
Protein tyrosine kinase, which selectively phos-
phorylates the internal tyrosine (Tyr,Y) residue
in the sequence GIYWHHY, is overexpressed
in colon and breast cancer.^^^^^^ Further-
more, cycUc AMP-dependent protein kinase
activities have been associated with the onset of
Alzheimer's disease, where the proteolytic
degradation product of a hyperphosphorylated
former membrane protein is the principal con-
stituent of the characteristic plaques of
Alzheimer's disease.^^^ Thus, there is great
interest in the capacity to assay for kinase activ-
ities in tissue homogenates,^^"^^^^ particularly if
simple biopsies could suffice and there would
be no need to resort to phosphorus-32, a high-
energy emissions radionuclide that increases
health risks.
The potential, therefore, is to introduce single
or multiple globular protein element(s) with all
of the specificity of an enzyme and to achieve the
ultimate in sensitivity, the detection of a single
molecular interaction. By selection of the appro-
priate globular sensing element, one can look to
the polar analytes of phosphates, nerve gases,
toxins, or explosives that
would,
on interaction
with the globular protein sensing element, alter
its sawtooth profile.
9.4.8.3 Nanosensors Using
Mechanical Resonances
Another striking property of certain elastic
protein-based polymers, as shown in part by the
data in Figure 9.15, is that they can exhibit an
intense mechanical resonance in the acoustic
absorption range that varies as a function of
hydrophobic assembly. That is, the intensity of
the mechanical resonance increases as the
hydrophobic assembly of the inverse tempera-
ture transition progresses and, of course,
decreases as hydrophobic dissociation occurs.
Thus,
elastic protein-based (bioelastic) poly-
mers are capable of 18 classes of pairwise free
energy transductions; they can be produced
with diverse composition, fixed sequence, and
precise length, and they can exhibit intense
mechanical resonances in the acoustic absorp-
tion range that undergo very large intensity
changes during transduction.
Interesting additional methodologies are
under development; they build on the funda-
mental design of the AFM. This development
involves vibrating the cantilever at a frequency
of
16
kHz, for example, to characterize the
shear modulus properties of the polymer with
which the cantilever tip makes contact, as first