86 CHAPTER 2. ANALYTICAL METHODS
disparate scales. The second is when the system has self-similar behavior at different
scales. A natural question is: What happens in more general situations? To address this
question, we turn to the Mori-Zwanzig formalism.
The Mori-Zwanzig formalism is a strategy for integrating out a subset of variables
in a problem, which is precisely what we would like to do when performing coarse-
graining [?, ?]. What is remarkable about the Mori-Zwanzig formalism is its generality
– it applies to general nonlinear systems. However, at some level, it is also a tautology,
since what it does is simply to represent the solution for a subset of the variables (the
ones to be eliminated) as functionals of the other variables (the ones to be kept) and
then substitute back into the (projected form of the) original equation. In this way, some
variables are formally eliminated, but the remaining m odel is often far from being explicit.
Nevertheless, it is still a very good starting point for model reduction or coarse-graining
for the following reasons:
1. It is a general strategy.
2. It suggests the form of the reduced model. For example, if we start with the
equations in molecular dynamics, then the model obtained after elimination of
some variables can be viewed as a generalized Langevin equation, with noise and
memory terms.
3. It provides the starting point for making further approximations. From a practical
viewpoint, this is the most imp ort ant application of the Mori-Zwanzig formalism.
For example, the abstract generalized Langevin equation that arises from the appli-
cation of the Mori-Zwanzig formalism to molecular dynamics models can sometimes
be approximated by a much simpler Langevin equation.
We start with a simple example to illustrate the basic idea. Consider a linear system
dp
dt
= A
11
p + A
12
q, (2.7.1)
dq
dt
= A
21
p + A
22
q. (2.7.2)
Our objective is to obtain a closed model for p, which is the quantity that we are really
interested in. To this end, we solve the second equation for q, viewing p as a parameter:
q(t) = e
A
22
t
q(0) +
Z
t
0
e
A
22
(t−τ)
A
21
p(τ) dτ.