324
7.
Biology Thrives Near a Movable Cusp of Insolubility
There is another aspect noted by Francis
Bacon in The New Organon, "The human
understanding is no dry light, but receives an
infusion from the will and affections; whence
proceed sciences which may be called 'sciences
as one would wish.' For what a man had rather
were true he readily believes." It is particularly
difficult for anyone to allow ready marginaliza-
tion of a hard-won and once very empowering
viewpoint.
Of course, the basic issue in science always
remains the extent to which any concept con-
tinues to bear fruit. The wonderful thing about
scientific pursuit is that there is a correct and
unchanging truth and that progress is best
achieved by hewing to that path as closely as
possible. This was attempted, as reported in
part in Chapter 5, by repeatedly designing new
protein-based machines and testing those
designs for intended function.
6. Webster's Third New International Dictionary
of the English Language, Unabridged, Merriam-
Webster, Inc., Springfield, MA,
1993,
p.
557.
7.
The formation of hydrophobic hydration from
bulk water gives a negative change in
AS,
which
makes the (-TAS) term positive for this process,
whereas the conversion of hydrophobic hydra-
tion to bulk water results in a positive change
in AS such that the (-TAS) term is negative for
this process.
8. Borland's Illustrated Medical Dictionary, 2T^
Edition. W.B. Saunders, Philadelphia, 1985,
p.
1468.
9. Webster's Third New International Dictionary
of the English Language, Unabridged. Merriam-
Webster, Inc., Springfield, MA,
1993,
p. 432.
10.
C.S. Roy, "The Elastic Properties of the
Arterial Wall." /. Physiol, 3,125-159,1880.
11.
L.B. Sandberg, J.G. Leslie, C.T. Leach, V.L.
Alvarez, A.R. Torres, and D.W. Smith, "Elastin
Covalent Structure as Determined by SoUd
Phase Amino Acid Sequencing." Pathol Biol,
33,266-74,1985.
12.
T. Weis-Fogh and S.O. Andersen, "New Molec-
ular Model for the Long-range Elasticity of
Elastin." Nature, 227,718-721,1970.
13.
C.A. Hoeve and PJ. Flory, "The Elastic Proper-
ties of Elastin." Biopolymers, 13,677-686,1974.
14.
A.V. Hill, "A Discussion on the Thermodynam-
ics of Elasticity in Physiological Tissues." Proc.
R.
Soc.
Lond.
B, 139, 464^97,1952.
15.
D.K. Hill, "The Effect of Temperature in the
Range 0-35 Degrees C on the Resting Tension
of Frog's Muscle."/. Physiol,2m,725-739,1970.
16.
K.W. Ranatunga, "Thermal Stress and Ca-
independent Contractile Activation in Mam-
maUan Skeletal Muscle Fibers at High
Temperatures." Biophys. J., 66,1531-1541,1994.
17.
D.W. Urry, D.C. Gowda, S.-Q. Peng, and T.M.
Parker, "Non-linear Hydrophobic-induced pKa
Shifts: Implications for Efficiency of Conver-
sion to Chemical Energy." Chem. Phys. Lett.,
239,
67-74,1995.
18.
A.V. Hill, "The Possible Effect of the Aggrega-
tion of Hemoglobin on its Dissociation
Curves." Proceedings of the Physiological
Society, /. Physiol, 40, iv-vii, 1910, and A.V.
Hill. /. Biochem., 1, 471^80,1913.
19.
N.B. Butwell, R. Ramasamy, I. Lazar, A.D.
Sherry, and C.R. Malloy, "Effect of Lidocaine
on Contracture, Intracellular Sodium, and pH
in Ischemic Rat Hearts." Am. J. Physiol,
264(6Pt2), H1884-H1889,1993.
20.
K.I. Furakawa, J. Komaba, H. Sakai, and Y.
Ohizumi, "The Mechanism of Acidic pH-
Induced Contraction in Aortae from SHR and
WKY Rats Enhanced by Increasing Blood
Pressure." Br J. Pharmacol, 118, 485-492,
1996.
21.
D.W. Urry and S.-Q. Peng, "Non-linear
Mechanical Force-induced pKa Shifts: Implica-
tions for Efficiency of Conversion to Chemical
Energy." / Am. Chem. Soc, 111, 8478-8479,
1995.
22.
J.W Pringle, "The Croonian Lecture, 1977.
Stretch Activation of Muscle: Function and
Mechanism." Proc. R. Soc.
Lond.
Ser B Biol
ScL,
201(1143), 107-130,1978.
23.
N.
Thomas and R.A. Thornhill, "Stretch Activa-
tion and Nonlinear Elasticity of Muscle Cross-
bridges." Biophys. /., 70(6):2807-2818,1996.
24.
M. Suzuki, J. Shigematsu, Y. Fukunishi, Y.
Harada, and
T.
Yanagida,T. Komada, "Coupling
of Protein Surface Hydrophobicity Change to
ATP Hydrolysis by Myosin Motor Domain."
Biophys. J., 72,18-23,1997.
25.
M.F Perutz, "Mechanisms of Cooperativity and
AUosteric Regulation in Proteins." Q. Rev.
Biophys., 22,139-236,1989.
26.
D. Bulone, M.B. Palma-VittorelU, and M.U.
Palma, "Enthalpic and Entropic Contributions
of Water Molecules to Functional T
—>
R Tran-
sition of Human Hemoglobin in Solution." Int.
J. Q. Chem., 42,1427-1437,1992.
27.
D. Bulone, PL. San Biagio, M.B. Palma-
Vittorelli, and M.U. Palma, "On the Role of
Water in Hemoglobin Function and Stability,
Response." Science, 259,1335-1336,1993.