Luan S. (ed.) Coding and Decoding of Calcium Signals in Plants [Signaling and Communication in Plants]

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DGKs, 215

Diacylglycerol (DAG), 214, 215

Diacylglycerol kinases (DGKs), 215

Dihydrosphingosine, 17

DMI3, 10, 14, 17, 191

DWF1, 183, 211, 212, 216

DWF4, 212

Dynein, 205, 206

EDS1, 196

EF-hand, 151

EF-hand-like Ca

-binding proteins

caleosins, 157

14–3–3’s, 157

SUBS, 157

EF-hand motif, 152

EF hands, 130, 131, 133–135, 141, 178, 179,

184–188, 190, 193, 194, 209

EGTA, 213

ER Ca

-ATPase, 182

Eyespot, 81

Flagella, 81, 85, 87, 88

demembranated, 83

intraﬂagellar transport (IFT), 89

Fluphenazine, 213

GAD. See Glutamate decarboxylase (GAD)

GAD1, 181, 182

GAD-calmodulin, 184

Gametogenesis, 195

Gels, 4

Gibberellin (GA), 138, 139

Glutamate decarboxylase (GAD), 181, 182,

184, 216

Glutamate Receptors (iGluR), 17

GmCaM1, 198

GmCaM4, 198, 199

G-proteins

RhoGDIs, 47

ROPs, 47

Green ﬂuorescent protein (GFP), 165

GTG1, 67

Guanylyl cyclase, 212

Guard cell outward rectifying K channel

(GORK), 68

Guard cells, 3, 54, 63, 64

HACC. See Hyperpolarisation-activated Ca

channels (HACC)

High-throughput methods, 161

High-throughput yeast two-hybrid

assays, 163

,72

HY5, 199

Hyperpolarisation-activated Ca

channels

(HACC), 66, 67, 69

Hypoxia (oxygen deﬁciency),

iGluR channels, 18

Inositol(1,4,5)trisphosphate (Ins(1,4,5)P

), 69

Inositol trisphosphate (IP3) receptor, 244

Ins(1,4,5)P

. See Inositol(1,4,5)trisphosphate

(Ins(1,4,5)P

)

Ion channels

, 93, 94

conductance, 93, 94

-dependent channels, 16

IQD1, 186

IQ motifs, 180, 186, 198

Jasmonate, 17

Jasmonoyl-isoleucine, 17

K, 64

KATA/ATK1, 207

KCBP. See Kinesin-like calmodulin-binding

protein (KCBP)

KCBP/ZW1, 208

KIC, 156

Kinesin 1, 207

Kinesin 5, 208

Kinesin 14, 207, 208

Kinesin-like calmodulin-binding protein

(KCBP), 156, 159, 184, 207, 208

Kinesin-like protein, 182

Kinesins, 206–208

LeCBDGK, 183, 215

Lipid modiﬁcations

myristoylation, 237, 241, 242, 245, 246

N-myristoylation, 237, 241

262 Index

prenylation, 242

S-acylation, 237, 241, 245, 246

Logic modules, 5

Loss-of-function, 166

Magnesium-protoporphyrin-IX chelatase

(Mg-chelatase), 67

Maize pollen calmodulin-binding protein

(MPCBP), 160

Malate, 64

MAPK, 215, 216

MAPK 6, 216

MAPKK, 215

MAPKKK, 215

MAPK-mediated phosphorylation, 215

MAPK/WIPK, 215

Mastoparan, 11

MCA, 51

McCPK1, 135

Mechanoresponse

Mechanoresponse, avoiding reaction, 84

Mechanosensitive channels

avoiding reaction, 87

MscS-like protein, 88

transient receptor potential (TRP)

channels, 87

Medaka, 1–3

Membrane, 111

chloroplast, 116

lipid peroxidation, 122

phospholipase, 119, 120

phospholipid, 114

raft, 112, 122

repair, 112

thylakoid, 116

tonoplast, 116

Microsporogenesis, 208

Microtubules, 207

Mitogen-activated protein kinase

(MAPK), 215

MKP1, 216

MLO, 182, 202, 216

Modeling, 7

Molecular motors, 202

Motor domains, 207

MPCBP, NPG1, 183

MPK1, 216

MPK6, 216

mRNA display, 164

MSL, 51

MYC2, 17

Myosin, 203–205

Myosin II, 203

Myristoylation, 131

NAD2, 183

NADPH oxidase, 44, 48, 139

AtRBOH C, 44, 46

AtRBOH D, 49

AtRBOH F, 49

NAF Domain, 237, 239, 240, 246

CBL-interaction module, 246

FISL Domain,

Negative feedback, 2

Networks, 4

Neural networks, 5

Neuronal calcium sensor,

238, 239

NHE1, 201

Nitric oxide (NO), 70

Nitrogen (Nitrate), 250

Nkx2–5, 197

NMR, 178

NMR spectroscopy, 178

NOD factors, 10, 53, 54

NpCaM–1, 17

NPCs, 11, 12, 18

NtCaM1, 193

NtCaM3, 193

NtCaM 13, 193

NtCBK1, 191, 193

NtCBP4, 182

NtCDPK1, 130, 132, 139, 140, 193

NtCDPK2, 135, 138, 193, 215

NtMKP1, 183, 186, 215

Nuclear Envelope, 10, 11, 15, 19

Nuclear Pore Complexes (NPCs), 10

Nucleus, 7–14, 17, 19

Organellar transport, 207

OsCBK, 191

OsCBT, 196

Oscillations, 68, 72–73

OsMKP1, 215

Osmotic shocks, 11

Osmotic stress, 251, 252

OST1, 68, 70

Overexpression, 166

Index 263

Palmitoylation, 131, 132

Parasitic, 133

Parasitic CDPK, 131–134

Pathogen defense responses

-ATPases, 104

elevation, 103

cyclic nucleotide, 103

HR, 102

NO, 104

PAMP, 102

PCaMPP, 194

PCBP, 182, 194, 216

pH, 15, 16

Phase transition, 3

Phosphate-binding loop (P-loop), 131, 132

Phosphatidic acid (PA), 214

Phosphatidylinositol (4,5)bis phosphate

(PIP 2), 69

Phospholipase D, 214

Photophobic response, 81, 83

PLA

, 214

PLA

, 214

Plasma membrane Ca

-ATPase, 182

Plasma membrane proton pump

(PM H+-ATPase), 252

PLC, 214

P + 1 loop, 131, 132

PMCAs, 201

Polarity, 3

Pollen tubes, 4

Pollen tubes, root hairs, 3, 4

Potassium, 248–251, 253

Potassium channel in Arabidopsis

thaliana 1 (KAT1), 65

PP7, 195

PP2C, 193

Programmed Cell Death (PCD), 17

Protein arrays, 162

Protein chips, 163

Protein kinases, 4, 55

/CaM-dependent, 54

CCaMK, 54

CDPK, 55

DMI3, 54

Protein phosphatase 2C proteins (PP2C), 66

Protein phosphatase interaction (PPI) domain,

237, 240, 244, 246, 254

Proteins, 112

actin, 111, 119

MAPK kinase, 120

NADPH oxidase, 122

14–3–3 protein, 120, 139, 201

ryanodine receptor, 121

S-glutathionylation, 116

S-nitrosylation, 116

Pseudomonas syringae, 197

PTP1, 216

Pumps, 42

Pyrabactin resistance/PYR1-like/regulatory

component of ABA receptor 1

(PYR/PYL/RCAR1), 66

Rboh (respiratory burst oxidase homology),

155

RD29A, 192, 193

RD29B, 193

Respiratory burst oxidase protein F

(AtRBOHF), 66, 67

RNA transport, 207

Root formation, 4

Root hairs, 3, 4

Rop GTPase signaling

and calcium signaling, 25–36

computational modeling, 34

and F-actin, 26

ROP1 effectors, 30–31, 33–34

ROP1 enhancer, REN1, 32, 34, 35

ROP1 feedback regulation, 26, 35

ROP1 pathway, 26, 35

ROS, 46, 48, 50, 137–139

,44

RSG, 138–140

SAUR39, 213, 214

SAURs, 213, 216

SCA1, 182

Ser/Thr phosphatase, 195

SIPK, 215

SLAC1. See Slow anion channel 1 SLAC1

(SLAC1)

Slow anion channel 1 SLAC1 (SLAC1),

66, 67, 69

Slow vacuolar/two pore channel 1

(SV/TPC1), 68

SNF1-related protein kinase family (SnRK2),

66, 67

SnRK2. See SNF1-related protein kinase

family (SnRK2)

Sodium, 243, 244, 247, 248, 251, 254

salinity stress, 248

salt stress, 243, 244, 247, 248, 252, 253

264 Index

SoybeanSCA1, 182

Sphingolipids, 11, 17, 18

Spindle assembly, 208

Spindle elongation, 207

SPK, 138

StCDPK5, 139

Stomata, 63

Stress, 112

ABA, 120

drought, 120

reactive oxygen species, 121

salinity, 120, 121

temperature, 115

Structured water, 4

Substrate speciﬁcity, 140

Sucrose, 64

Sucrose non-fermenting (SNF)-related

kinase (SnRK), 239

TAC1. See Telomerase activator1 (TAC1)

Tandem afﬁnity puriﬁcation (TAP), 164

Taxis, 79

gravitaxis, 84

phototaxis, 80, 82

TCP60, 183

T-DNA insertion mutants, 167

Telomerase activator1 (TAC1), 195

TGA, 195

TGA3, 195, 196

TgCDPK1, 141

Three-dimensional structure, 178

Tic32, 183

Tip growth, 25–36

and calcium-dependent protein kinase

(CDPK), 35

hyphae, 42

pollen tubes, 42–44

pollen tube tip growth, 25–36

rhizoids, 42, 44

root hairs, 42, 43

and tip-focused calcium, 26, 28, 30,

33–35

TOT4/KTI12, 199

TPC1, 69

Transient Receptor Potential (TRP)-like, 16

Triﬂuoperazine, 213

TRP, 18

Vacuolar Ca

-ATPase, 182

Variable N-terminal domain, 130–132, 135,

136, 140, 141

Vesicles, 207

W–7, 213

Wave, 3

WIPK, 215

WRKY, 197

WRKY 7, 197

WRKY11, 197

WRKY 17, 197

WRKY group IId AtWRKY7, 183

WRKYs, 216

X-ray crystallography, 178

Yucca, 195

Zf-TAZ, 195

Z-/G-box, 199

ZmSAUR1, 182, 213

Index 265